Previous: set-alignment-gap-and-space-penalty, Up: Align and Mutate


11.39.3 align-to-closest-chain

— function: align-to-closest-chain target_seq match_fraction

Where:

align sequence to closest chain (compare across all chains in all molecules).

Typically match_fraction is 0.95 or so.

Return 1 if we were successful, 0 if not.