— function: execute-refmac-real pdb_in_filename pdb_out_filename mtz_in_filename mtz_out_filename cif_lib_filename fobs_col_name sigfobs_col_name r_free_col_name have_sensible_free_r_flag make_molecules_flag refmac_count_string swap_map_colours_post_refmac_flag imol_refmac_map diff_map_flag phase_combine_flag phib_string fom_string ccp4i_project_dir

Where:

• pdb_in_filename is a std::string
• pdb_out_filename is a std::string
• mtz_in_filename is a std::string
• mtz_out_filename is a std::string
• cif_lib_filename is a std::string
• fobs_col_name is a std::string
• sigfobs_col_name is a std::string
• r_free_col_name is a std::string
• have_sensible_free_r_flag is an integer number
• make_molecules_flag is an integer number
• refmac_count_string is a std::string
• swap_map_colours_post_refmac_flag is an integer number
• imol_refmac_map is an integer number
• diff_map_flag is an integer number
• phase_combine_flag is an integer number
• phib_string is a std::string
• fom_string is a std::string
• ccp4i_project_dir is a std::string

if swap_map_colours_post_refmac_flag is not 1 thenn imol_refmac_map is ignored.