— procedure: generic-object-is-displayed?

map to scheme names:

— procedure: is-closed-generic-object?

map to scheme names:

— procedure: generic-object-with-name

return a new generic object number for the given object obj-name. If there is no such object with name obj-name, then create a new one. (Maybe you want the generic object to be cleaned if it exists before returning, this function does not do that).

— procedure: generic-objects-gui

display a GUI for generic objects

— procedure: reduce-on-pdb-file imol pdb-in pdb-out

return status.

— procedure: probe

run molprobity (well reduce and probe) to make generic objects (and display the generic objects gui)

— procedure: write-reduce-het-dict imol reduce-het-dict-file-name

Write the connectivity for the non-standard (non-water) residues in the given molecule for which we have the dictionary.

Don't return anything interesting.

— procedure: *interactive-probe-is-OK?*

gets set the first time we run interactive-probe. Takes values unset (initial value) 'yes and 'no)

— procedure: interactive-probe

run "probe" interactively, which in the current implementation, means that this function can run during a edit-chi angles manipulation, or after a real space refine zone.

Thus function presumes that there are 2 pdb files in the current directory, one of which is the reference pdb file and the other is a pdb file containing the tmp/moving atom set.

The function takes arguments for the centre of the probe dots and the radius of the probe dots sphere. The chain id and residue number are also needed to pass as arguments to probe.

— procedure: probe-local-sphere imol radius

Update the generic objects probe dots from residues within radius of the screen centre.

Return nothing interesting.